HMMTeacher

HMMTeacher guides you in the learning of the mechanics of solving the main three HMM algorithms. From the input of the data of a pre-stated HMM, passing by choosing the questions asked and the algorithms to apply, to the final report, containing the step-by-step algorithms solution.

Step 1 - States
Hidden States
Step 2 - Matrix
Fill the matrix
Step 3 - Algorithm
Select an algorithm
Step 4 - Results
Final results

Select the alphabet of the observed sequence of states to use. Need more help?

You must select one of the 3 options to enable the inputs

You can change the data to try new things!

Either uppercase or lowercase letters are allowed

Is it your first time here? Ideally, use the manual to guide you in your first HMM model!

DNA Sequence

DNA alphabet

Alphabet of observed states: DNA Nucleotides (ACTG)

DNA observed sequence

Observed DNA sequence (One character per observed symbol. Max length: 100 characters.)

Hidden states:

Protein Sequence

Protein alphabet

Alphabet of observed states: One letter code for Proteins (ARNDBCEQZGHILKMFPSTWYV).

Protein observed sequence

Observed Protein sequence (One character per observed symbol. Max length: 100 characters.)

Hidden states:

Custom Sequence

Custom alphabet

Any custom alphabet, one character per symbol, without separators.
Example of alphabet of observed states for a coin, H (Heads) T (Tail): HT

Custom observed sequence

Observed Custom sequence (One character per observed symbol. Max length: 100 characters.)

Hidden states:

HMMTeacher

DNA Sequence

Protein Sequence

Custom Sequence

Priors Vector

Transition matrix

Emission matrix

HMM algorithms